The second part of https://github.com/npanuhin/BIOCAD

Multi-class classification of drug resistance in MTB clinical isolates

Multi-class classification of drug resistance in MTB clinical isolates

PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.

R wrapper for BWA-backtrack and BWA-MEM aligners

Codes i wrote for the paper "genomic resources for Mediterranean fishes"

Created a pipeline to carry out the alignment of a reference genome to the creation of a variant calling format (VCF).

Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.

Nextflow resequencing pipeline with bwa-mem and freebayes

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

Fast bwa-mem dna matching algor implemented in system verilog, fully synthesizable.

Small GATK alignment and variant calling pipeline using python

JNI code for bwa mem

Collecting Genotypes from ENA and make their SNPs

Mapping using PCAP

vSNP -- validate SNPs

The DKFZ alignment workflow plugin originally developed at the eilslabs

Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads