Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Learning the Variant Call Format

GCP Variant Transforms

Rare variant test software for next generation sequencing data

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

Rapid standardisation and quality control of GWAS or QTL summary statistics

Powerful statistics for VCF files

A python parser to simplify and build the VCF (Variant Call Format).

create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks

A phenotype-based tool for variant prioritization in WES and WGS data

A full-featured Python package for parsing and creating iCalendar and vCard files

visual analysis of your VCF files

Intersect multiple VCF files with haplotype awareness

Spark VCF data source implementation for Dataframes

Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).

Read and write VCF and BCF files

Evolutionary Bioinformatics Toolkit (EBT)

A simple Python script for extracting images out of an "SMS Backup & Restore" backup.

Visualize microbial evolution at the SNP level!

Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts