A bioinformatics pipeline to analyze mtDNA from NGS data

Workflow for human mitochondria analysis

Infer the dynamics of mitochondrial heteroplasmy during different life stages using population genetics and phylogenetics

HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high-fidelity (HiFi) reads or Circular Consensus Sequencing (ccs) data, to a reference genome (i.e., the hypothetical master cycle DNA).

A pipeline for mitochondrial mutation calling

This workflow performs a variant analysis on mitochondrial genomes using the bcftools variant caller. For human samples, the workflow also performs a variant analysis using mutserve.

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

MitoX: exploring mitochondrial variants and gene expressions from single cell sequencing assays

PrecisionCallerPipeline (PCP) automatically takes Precision ID mtDNA Whole Genome Panel (Thermo Fisher Scientific, USA) FASTQ files and outputs BAM files correctly aligned to the rCRS.