📊 A universal enrichment tool for interpreting omics data
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Feb 27, 2025 - R
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enrichment-analysis
Here are 116 public repositories matching this topic...
🧬 gget enables efficient querying of genomic reference databases
rna-seq genomics reference databases ensembl proteomics blast transcriptomics uniprot ncbi enrichment-analysis enrichr alphafold gget archs4 alphafold2
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Mar 15, 2025 - Python
Gene Set Enrichment Analysis in Python
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Mar 18, 2025 - Python
Visualization of Functional Enrichment Result
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Mar 11, 2025 - R
Python package to perform enrichment analysis from omics data.
python data-science bioinformatics enrichment numba transcriptomics single-cell enrichment-analysis spatial-transcriptomics
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Feb 7, 2025 - Python
😷 Disease Ontology Semantic and Enrichment analysis
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Oct 30, 2024 - R
📚 Biomedical knowledge mining using GOSemSim and clusterProfiler
gene-ontology semantic-similarity disease-ontology medical-subject-headings enrichment-analysis gosemsim clusterprofiler
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Jun 19, 2023 - TeX
MSigDB gene sets for multiple organisms in a tidy data format
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Mar 19, 2025 - R
🧬 Gene analysis toolkit based on R
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Jan 6, 2025 - R
Enrichment Networks for Pathway Enrichment Analysis
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Apr 14, 2023 - R
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
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Mar 20, 2025 - Python
Reactome Pathway Analysis
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Oct 30, 2024 - R
A standalone interactive application for detecting biological significance on a set of genes
gene shiny data-visualization gene-ontology shiny-apps kegg-pathway enrichment-analysis non-model-species gene-list sig-bio-shiny annotationhub
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May 2, 2021 - R
This RNAseq data analysis tutorial is created for educational purpose
tutorial rna-seq r analysis ngs gene-expression pca-analysis rnaseq deseq2 bioconductor-packages enrichment-analysis edger ngs-analysis rnaseq-workshop reactome-pathway rnaseq-pipeline rna-seq-dge
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Feb 24, 2025 - R
A Python package for gene network analysis
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Jun 22, 2022 - Python
A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
visualization workflow bioinformatics gene-sets rna-seq snakemake pipeline chip-seq atac-seq gene-set-enrichment enrichment-analysis genomic-regions biomedical-data-science motif-enrichment-analysis
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Jan 31, 2025 - Python
mulea - an R package for enrichment analysis using various ontologies and empirical false discovery rate
enrichment r-package ontologies transcriptomics gene-set-enrichment enrichment-analysis cran-r functional-enrichment-analysis
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Dec 11, 2024 - R
A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
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Mar 15, 2025 - R
Gene Co-expression Network analysis pipeline
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Jul 3, 2023 - R
Flask app for gene over-representation analysis based on Wikidata.
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Nov 26, 2024 - HTML
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