🧬 gget enables efficient querying of genomic reference databases
Gene Set Enrichment Analysis in Python
Python package to perform enrichment analysis from omics data.
Python implementation of Spatial Analysis of Functional Enrichment (SAFE)
A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.
A Python package for gene network analysis
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
Library for KEGG pathway enrichment analysis
HARE: Genetic Feature Enrichment Analysis Pipeline
Overrepresentation analysis for KEGG and PID pathways using community detection
LORA: Lipid Over-Representation Analysis
Generic enrichment analysis
A Python library and command-line tool for creating dot-plots for pathways and enrichment analysis.
Bayesian tests for set enrichment 🍞
This project features a pipeline for Gene Ontology (GO) enrichment analysis on candidate genes with functional transcriptome annotations. It identifies enriched Biological Processes (BP), Cellular Components (CC), and Molecular Functions (MF), using R and Python to create 2D treemaps and interactive 3D visualizations of GO terms.
Published in GigaScience. Web app for post-GWAS/QTL analysis that performs a slew of novel bioinformatics analyses to cross-reference GWAS/QTL mapping results with a host of publicly available rice databases
A Web-Based Gene-Enrichment and Functional Annotation Tool
GOpiscator is a command-line tool for performing gene set enrichment analysis using the Gene Ontology (GO) database.
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