Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI

Landmark-based segmentation using multi-atlas

Image segmentation and accuracy prediction via Multi-atlas segmentation (MAS) and Reverse classification accuracy (RCA)

Brain tissue (WM, GM, CSF) segmentation using both multi-atlas and nnUNet approaches. This project was developed for a course titled "Medical Image Segmentation and Applications" - MISA under MAIA master program.