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nucleotide-diversity

Here are 4 public repositories matching this topic...

SNPGenie

chasewnelson / SNPGenie

Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data

evolution perl next-generation-sequencing vcf population-genetics dnds-estimation molecular-evolution nucleotide fasta-sequences vcf-files diversity-measurement sequence-analysis dnds natural-selection snp-report nucleotide-diversity evolutionary-parameters substitution-rate nei-gojobori

Updated Aug 21, 2023
Perl

MafaldaSFerreira / Atlherr_inversion_evol

Evolutionary genomics of chromosomal inversions in Atlantic herring

genomics pca dnds-estimation phylogenomics genotype transposable-elements recombination fst long-reads evolutionary-biology nucleotide-diversity whole-genome-alignment dxy inversions gatk4 short-reads site-frequency-spectrum

Updated Apr 22, 2024
R

chasewnelson / Soni-response

Scripts, analysis code, input data, and intermediate files for response to Soni et al.

diversity evolution slim nucleotide natural-selection nucleotide-diversity covid-19 sars-cov-2 evolutionary-simulation intrahost-genetic-diversity intrahost

Updated Apr 20, 2024
R

zhuochenbioinfo / hetPi

Nucleotide diversity estimation using VCF input with special treatment for heterozygous genotypes

population-genetics nucleotide-diversity

Updated Jan 6, 2023
Perl

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