Clustering scRNAseq by genotypes
-
Updated
Nov 15, 2024 - Python
#
scrna-seq-analysis
Here are 26 public repositories matching this topic...
scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks
-
Updated
Jul 25, 2024 - Python
Quantifying experimental perturbations at single cell resolution
-
Updated
Sep 27, 2024 - Python
An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
scrna-seq single-cell fastq demultiplexing single-cell-rna-seq single-cell-analysis single-cell-omics scrna-seq-analysis single-cell-sequencing split-seq
-
Updated
Oct 4, 2023 - Python
Single cell type annotation guided by cell atlases, with freedom to be queer
-
Updated
Jul 25, 2022 - Python
Single cell analysis using Low Resource
machine-learning bioinformatics deep-learning neural-network bioinformatics-pipeline single-cell biomarker-discovery scrna-seq-analysis
-
Updated
Feb 10, 2025 - Python
scRNA multimodal analysis pipeline utilised for large dataset processing
-
Updated
Feb 28, 2025 - Python
Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data
bioinformatics causal-inference treatment-effects batch-effects perturbation-analysis scrna-seq-analysis causal-machine-learning insilico-prediction
-
Updated
Feb 6, 2025 - Python
orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.
python bioinformatics evolution gene-expression transcriptome gene-expression-profiles orthofinder tai scrna-seq-analysis phylostratigraphy scanpy expression-profiles orthomap
-
Updated
Nov 20, 2023 - Python
scSPARKL is an Apache spark based pipeline for performing variety of preprocessing and downstream analysis of scRNA-seq data.
-
Updated
Jul 2, 2023 - Python
Folded and map strategy and cell perturbation response prediction
-
Updated
Dec 14, 2022 - Python
AutoML-based Genetic regulatory Element extrAction System
-
Updated
Dec 18, 2024 - Python
PyPairs - A python scRNA-Seq classifier
-
Updated
Feb 17, 2021 - Python
PHet: Heterogeneity-Preserving Discriminative Feature Selection for Subtype Discovery
single-cell scrna-seq-analysis microarray-data-analysis patient-subtyping cell-types subtype-finding
-
Updated
Feb 9, 2025 - Python
-
Updated
Mar 10, 2022 - Python
Constructing a developmental tree from scRNA-seq data
-
Updated
Jun 9, 2022 - Python
An effective tool for single-cell RNA sequencing.
-
Updated
Apr 19, 2024 - Python
Finding and analyzing alternate poly-A sites in 3' scRNA-seq 10X files
-
Updated
Apr 1, 2021 - Python
Tools, wrappers, utilities, and resources for handling single-cell and spatial transcriptomics data
-
Updated
Nov 4, 2024 - Python
Single-cell eQTL mapping and causal gene regulatory network inference at high efficiency and accuracy
causal-inference gene-regulatory-network mendelian-randomization scrna-seq-analysis eqtl-mapping single-cell-multiomics
-
Updated
Jan 29, 2025 - Python
Improve this page
Add a description, image, and links to the scrna-seq-analysis topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the scrna-seq-analysis topic, visit your repo's landing page and select "manage topics."