R toolkit for single cell genomics
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Feb 7, 2025 - R
#
single-cell-rna-seq
Here are 171 public repositories matching this topic...
NicheNet: predict active ligand-target links between interacting cells
rna-seq gene-expression network-inference data-integration single-cell-rna-seq single-cell-omics intercellular-communication ligand-receptor ligand-target cell-cell-communication
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Sep 5, 2024 - R
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
scrna-seq shiny-apps single-cell shinyapps single-cell-genomics single-cell-rna-seq single-cell-analysis single-cell-atac-seq seurat single-cell-omics scrna-seq-analysis single-cell-sequencing shiny-app scanpy scatac-seq anndata scrna-pipeline seurat-objects single-cell-pipeline
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May 21, 2024 - R
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Jan 7, 2025 - R
Table of software for the analysis of single-cell RNA-seq data.
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Feb 13, 2025 - R
Multi-subject Single Cell Deconvolution
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Mar 4, 2024 - R
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
visualization ggplot2 customization scrna-seq single-cell single-cell-genomics single-cell-rna-seq seurat
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Feb 6, 2025 - R
R package for the joint analysis of multiple single-cell RNA-seq datasets
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Feb 26, 2024 - R
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
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Sep 24, 2024 - R
Generate high quality, publication ready visualizations for single cell transcriptomics data.
visualization ggplot2 r data-visualization rstats single-cell single-cell-genomics single-cell-rna-seq publication-quality-plots seurat
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Feb 13, 2025 - R
Haplotype-aware CNV analysis from single-cell RNA-seq
cancer-genomics single-cell phylogeny single-cell-rna-seq single-cell-analysis cnv-detection spatial-transcriptomics lineage-tracing
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Dec 5, 2024 - R
Seurat meets tidyverse. The best of both worlds.
ggplot2 dplyr tidyverse pca transcripts single-cell tsne umap normalization tibble tidyr sct purrr single-cell-rna-seq seurat
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Jul 23, 2024 - R
Interfaces for HDF5-based Single Cell File Formats
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Nov 4, 2023 - R
scplotter is an R package that is built upon plotthis. It provides a set of functions to visualize single-cell sequencing data in an easy and efficient way.
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Feb 10, 2025 - R
A collection of 50+ trajectory inference methods within a common interface 📥📤
bioinformatics-algorithms single-cell-rna-seq single-cell-analysis trajectory-inference-methods trajectory-inference pseudotemporal-ordering
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Dec 21, 2023 - R
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
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Jun 28, 2021 - R
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets
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Feb 9, 2025 - R
Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets
bioinformatics statistical-methods data-visualization dimensionality-reduction single-cell-genomics single-cell-rna-seq nonnegative-matrix-factorization single-cell-analysis single-cell-atac-seq
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Aug 2, 2023 - R
R package to visualize gene expression data based on weighted kernel density estimation
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Feb 27, 2024 - R
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