v0.3.1

• adds fix from @jts for segfault in check_vcf caused by VCF with no records

v0.3.0

• updates the VCF checker to output a TSV report, plus an optional filtered VCF file
  • NOTE: CLI has now changed for this subcommand
• swaps CI over to GitHub actions from Travis
• adds some more tests

v0.2.6

Updates the primer scheme downloader to use the manifest at the ARTIC primer scheme repo

v0.2.5

Patch to update packaging and some minor tweaks to amplicon handling

v0.2.4

Patch added to reflect changes in primer-schemes

v0.2.3

• adds option to output primer scheme insert sizes as BED during scheme validation
• updates endpoints for grabbing schemes and standardises naming convention (see https://github.com/artic-network/primer-schemes)
• adds scheme alias for ncov to scov2

v0.2.2

• Adds sub command for downloading ARTIC primer schemes and reference sequences

v0.2.1

• Adds option to output primer sequences during scheme validation
• Allows non-versioned schemes to be validated
• Lib improvements (e.g. reducing string copies and more checking)

v0.2.0

Adds validate_scheme and check_vcf commands.

v0.1.2

Changing softmasker output to mirror the align_trim output of the artic pipeline. Mainly, output one BAM to STDOUT for either primer tagged or primer masked amplicons.