HRA UBKG Exporter

A CLI for exporting a subset of the HRA Knowledge Graph to UBKG format.

Quick Start

Once installing Node.js v18+ with NPM, you can run

npx github:x-atlas-consortia/hra-ubkg-exporter --help

to run the code without checking out the code manually with github.

Steps to install the software

Prerequisites

• Node.js v18+ (for native fetch support)

1. Clone the repo

$ git clone https://github.com/x-atlas-consortia/hra-ubkg-exporter.git
$ cd hra-ubkg-exporter

Or check out the same with Visual Studio Code or GitHub Desktop

2. Setting up the software

$ npm ci

3. Interacting with the software

The software can be interacted with a terminal. CLI options below:

Usage: hra-ubkg-exporter [options] <output folder>

Export the HRA to UBKG nodes/edges format.

Options:
  --version <version>  HRA version to export (default: "latest")
  --compress           compress the nodes and edges output
  -h, --help           display help for command