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Sonnenburg Lab

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  1. fiber-fermented-study fiber-fermented-study Public

    HTML 7 5

  2. Han_and_Van_Treuren_et_al_2021 Han_and_Van_Treuren_et_al_2021 Public

    Jupyter Notebook 7 1

  3. Metabolomics_Data_Explorer Metabolomics_Data_Explorer Public

    JavaScript 5

  4. MAGpurify MAGpurify Public

    Forked from snayfach/MAGpurify

    Improvement of metagenome-assembled genomes

    Python 1

  5. dbCAN_meta_server dbCAN_meta_server Public

    This repo contains code obtained from http://cys.bios.niu.edu/dbCAN2/download/

    Python

  6. lathe lathe Public

    Forked from bhattlab/lathe

    A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing

    Python

Repositories

Showing 10 of 17 repositories
  • RAMP_study_analysis Public
    SonnenburgLab/RAMP_study_analysis’s past year of commit activity
    0 0 0 0 Updated Nov 5, 2024
  • NSG_mouse_metagenomics Public

    This repo contains data regarding analysis of a diarrhea outbreak among NSG mice at Stanford University

    SonnenburgLab/NSG_mouse_metagenomics’s past year of commit activity
    0 0 0 0 Updated Aug 29, 2022
  • aws-genomics-workflows Public Forked from aws-samples/aws-genomics-workflows

    Genomics Workflows on AWS

    SonnenburgLab/aws-genomics-workflows’s past year of commit activity
    Shell 0 MIT-0 114 0 0 Updated Jun 17, 2022
  • cblaster Public Forked from gamcil/cblaster

    Find clustered hits from a BLAST search

    SonnenburgLab/cblaster’s past year of commit activity
    HTML 0 MIT 25 0 0 Updated May 4, 2022
  • project-probiotic-study Public

    Data and code for the Probiotic Study

    SonnenburgLab/project-probiotic-study’s past year of commit activity
    0 0 0 0 Updated Apr 27, 2022
  • dbCAN_meta_server Public

    This repo contains code obtained from http://cys.bios.niu.edu/dbCAN2/download/

    SonnenburgLab/dbCAN_meta_server’s past year of commit activity
    Python 0 0 3 0 Updated Apr 8, 2022
  • fiber-fermented-study Public
    SonnenburgLab/fiber-fermented-study’s past year of commit activity
    HTML 7 5 1 0 Updated Jun 29, 2021
  • Metabolomics_Data_Explorer Public
    SonnenburgLab/Metabolomics_Data_Explorer’s past year of commit activity
    JavaScript 5 0 0 0 Updated Jun 1, 2021
  • Han_and_Van_Treuren_et_al_2021 Public
    SonnenburgLab/Han_and_Van_Treuren_et_al_2021’s past year of commit activity
    Jupyter Notebook 7 1 0 0 Updated Jun 1, 2021
  • CAZy_Annotations Public

    Just a list of annotations for GHs and PLs. These are mostly pulled from cazypedia.org. These annotations are non-exclusive. For example, something can be annotated as animal carbohydrate degrading and HMO degrading. Feel free to add as you find new annotations.

    SonnenburgLab/CAZy_Annotations’s past year of commit activity
    0 0 0 0 Updated Oct 22, 2020
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