Skip to content
Change the repository type filter

All

    Repositories list

    • 0000Updated Nov 5, 2024Nov 5, 2024
    • This repo contains data regarding analysis of a diarrhea outbreak among NSG mice at Stanford University
      0000Updated Aug 29, 2022Aug 29, 2022
    • Genomics Workflows on AWS
      Shell
      MIT No Attribution
      110000Updated Jun 17, 2022Jun 17, 2022
    • cblaster

      Public
      Find clustered hits from a BLAST search
      HTML
      MIT License
      24000Updated May 4, 2022May 4, 2022
    • Data and code for the Probiotic Study
      0000Updated Apr 27, 2022Apr 27, 2022
    • This repo contains code obtained from http://cys.bios.niu.edu/dbCAN2/download/
      Python
      0030Updated Apr 8, 2022Apr 8, 2022
    • HTML
      5710Updated Jun 29, 2021Jun 29, 2021
    • JavaScript
      0500Updated Jun 1, 2021Jun 1, 2021
    • Jupyter Notebook
      1700Updated Jun 1, 2021Jun 1, 2021
    • Just a list of annotations for GHs and PLs. These are mostly pulled from cazypedia.org. These annotations are non-exclusive. For example, something can be annotated as animal carbohydrate degrading and HMO degrading. Feel free to add as you find new annotations.
      0000Updated Oct 22, 2020Oct 22, 2020
    • 0000Updated Oct 20, 2020Oct 20, 2020
    • PHISH

      Public
      PHages In SearcHsra
      0000Updated Feb 14, 2020Feb 14, 2020
    • run_dbcan

      Public
      Run_dbcan V2, using genomes/metagenomes/proteomes of any orgaisms(prokaryotes, fungi, plants, animals, viruses) to search for CAZymes.
      Python
      GNU General Public License v3.0
      41000Updated Feb 11, 2020Feb 11, 2020
    • drep

      Public
      Rapid comparison and dereplication of genomes
      Python
      38000Updated Feb 2, 2020Feb 2, 2020
    • VirSorter

      Public
      Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)
      Perl
      GNU General Public License v2.0
      30000Updated Dec 12, 2019Dec 12, 2019
    • lathe

      Public
      A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing
      Python
      MIT License
      18000Updated Nov 9, 2019Nov 9, 2019
    • MAGpurify

      Public
      Improvement of metagenome-assembled genomes
      Python
      GNU General Public License v3.0
      12100Updated Nov 4, 2019Nov 4, 2019