New Concondancecheck pipeline making use of Nextflow.
new automated
liftover if needed
Open array support
vcf support
cram/bam support
What's Changed
- Various small fixes for bin/ConcordanceCheck.sh by @pneerincx in #34
- first version of nf pipeline by @Gerbenvandervries in #33
- typo by @Gerbenvandervries in #35
- Major changes to dataflow of the pipeline, cram/bam support, extra logging to automated by @Gerbenvandervries in #36
- updated automation scripts, and bugfix fixed filenames. by @Gerbenvandervries in #37
- New version of ParseDarwinSamplesheet.sh script, finetuning concordance.sh, changed log location, lost of bugfixes by @Gerbenvandervries in #38
- made isilonmount location dependent on chaparone machine by @Gerbenvandervries in #39
- improve rsync command by @Gerbenvandervries in #40
- ignore project postfix by @Gerbenvandervries in #41
- bugfixes by @Gerbenvandervries in #42
New Contributors
- @Gerbenvandervries made their first contribution in #33
Full Changelog: 2.2.1...3.0.0
Contributors
pneerincx and Gerbenvandervries