Skip to content

Issues: mskcc/smile-server

New issue

Have a question about this project? # for a free GitHub account to open an issue and contact its maintainers and the community.

#

By clicking “#”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? # to your account

74 Open 1,003 Closed
74 Open 1,003 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Update documentation on the protobuf support + deployment steps.
#1381 opened Jan 27, 2025 by ao508
Dashboard not displaying validation reports bug Something isn't working
#1380 opened Jan 24, 2025 by ao508
Update script that resolves duplicate patients to handle more complex cases
#1379 opened Jan 23, 2025 by qu8n
Label generator: fix logic for nucleic acid counter when sample label is getting fixed/embedded with appropriate sample number DEPLOYED
#1378 opened Jan 22, 2025 by ao508
CMO Labels & ALT ID work Epic
#1377 opened Jan 22, 2025 by ao508
NATS config - consolidate and clean up pub/sub/consumers not in use NATS Server Administration
#1375 opened Jan 21, 2025 by ao508
3 tasks
Run assessment on how many CMO labels in SMILE are affected by the bad numbering (tumor count assignment)
#1373 opened Jan 9, 2025 by ao508
Adjust neo4j transactions to also rollback patient nodes created when a sample fails to import
#1372 opened Jan 9, 2025 by ao508
DB cleanup
#1371 opened Jan 9, 2025 by ao508
2 tasks done
1
Angelica - draft roadmap of SMILE 2025 goals
#1370 opened Jan 8, 2025 by ao508
Can we repurpose the comments field in sample metadata for logging changes made to data/labels. Dashboard Development
#1368 opened Jan 8, 2025 by ao508
Backfill alt id for all SMILE research samples external-dependencies MetaDB Server Development READY TO DEPLOY
#1358 opened Dec 19, 2024 by ao508
3 tasks done
1
[smile-server] monitor changes/updates to embargo status for tempo-cbio pipeline TEMPO-cBio Pipeline
#1354 opened Dec 18, 2024 by ao508
1
[smile-server] Publish (release) samples events for TEMPO-cBio pipeline TEMPO-cBio Pipeline
#1353 opened Dec 18, 2024 by ao508
1
Support protobuff for TEMPO-cBio pipeline JSON/data model TEMPO-cBio Pipeline
#1352 opened Dec 18, 2024 by ao508
1
Pub/Sub permissions for TEMPO-cBio pipeline TEMPO-cBio Pipeline
#1351 opened Dec 18, 2024 by ao508
1
TEMPO-cBio pipeline Epic TEMPO-cBio Pipeline
#1344 opened Dec 4, 2024 by ao508
Look into SMILE CRDB crosswalk table mappings discussion Bring issue up for discussion. external-dependencies
#1325 opened Nov 15, 2024 by ao508
Move 12-245 Part A/C consent status to patient-level metadata MetaDB Server Development
#1271 opened Sep 4, 2024 by ao508
1
Add new pub-sub topic for dbGap updates dbGaP NATS Server Administration
#1209 opened Jun 26, 2024 by ao508
1
Add message handler in SMILE server for incoming dbGap sample updates. dbGaP MetaDB Server Development
#1208 opened Jun 26, 2024 by ao508
Make dbGap info editable on SMILE dashboard (and push update to SMILE) Dashboard Development dbGaP
#1207 opened Jun 26, 2024 by ao508
Backfill existing dbGap sample data. dbGaP
#1206 opened Jun 26, 2024 by ao508
[dashboard] Export data from dbGap view into phenotype file format Dashboard Development dbGaP
#1205 opened Jun 26, 2024 by ao508
Display dbGap study in sample view and add dbGap tab Dashboard Development dbGaP
#1198 opened Jun 20, 2024 by ao508
ProTip! Updated in the last three days: updated:>2025-01-24.