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Source extraction and deconvolution
eftychios pnevmatikakis edited this page Jun 25, 2018
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To extract the different sources and deconvolve their activity CaImAn uses the CNMF algorithm.
Check the demo file demo_caiman_basic.py for a basic demonstration or the file demo_pipeline.py for a complete pipeline that also includes motion correction. The demo_pipeline.py file is also available as a notebook here.