Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

Sentieon DNAseq

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

Multi-class classification of drug resistance in MTB clinical isolates

Multi-class classification of drug resistance in MTB clinical isolates

Codes i wrote for the paper "genomic resources for Mediterranean fishes"

Created a pipeline to carry out the alignment of a reference genome to the creation of a variant calling format (VCF).