The second part of https://github.com/npanuhin/BIOCAD

Small GATK alignment and variant calling pipeline using python

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

Multi-class classification of drug resistance in MTB clinical isolates

Fast bwa-mem dna matching algor implemented in system verilog, fully synthesizable.

Multi-class classification of drug resistance in MTB clinical isolates

Collecting Genotypes from ENA and make their SNPs

Codes i wrote for the paper "genomic resources for Mediterranean fishes"

Created a pipeline to carry out the alignment of a reference genome to the creation of a variant calling format (VCF).

Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.

Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you need is a reference genome and some short reads

Nextflow resequencing pipeline with bwa-mem and freebayes

Installation and usage for various tools for cancer genomics

PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.

R wrapper for BWA-backtrack and BWA-MEM aligners

vSNP -- validate SNPs

JNI code for bwa mem

A pipeline to investigate horizontal gene transfer from NGS data