JNI code for bwa mem

Codes i wrote for the paper "genomic resources for Mediterranean fishes"

Sentieon DNAseq

The second part of https://github.com/npanuhin/BIOCAD

Created a pipeline to carry out the alignment of a reference genome to the creation of a variant calling format (VCF).

Collecting Genotypes from ENA and make their SNPs

Fast bwa-mem dna matching algor implemented in system verilog, fully synthesizable.

Focused on constructing a phylogenetic tree from Philippine strains of Candida albicans.

Small GATK alignment and variant calling pipeline using python

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

R wrapper for BWA-backtrack and BWA-MEM aligners

The DKFZ alignment workflow plugin originally developed at the eilslabs

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

Multi-class classification of drug resistance in MTB clinical isolates

Nextflow resequencing pipeline with bwa-mem and freebayes

A pipeline to investigate horizontal gene transfer from NGS data

C++ htslib/bwa-mem/fermi interface for interrogating sequence data