01. Software

I. Install Qiime2

Run the following command to install Qiime2 on your computer.

For MAC OS:

bash ./Scripts/1-download_software_MAC_OS.sh

For Linux OS:

bash ./Scripts/1-download_software_Linux_OS.sh

II. Activate Qiime2 environment

source activate qiime2-2018.2

III. Install MultiQC

pip install multiqc

IV. Install Cutadapt

pip install cutadapt

V. Download BBTools

mkdir Software
wget https://sourceforge.net/projects/bbmap/files/BBMap_37.99.tar.gz -O Software/BBMap_37.99.tar.gz
tar -xvf Software/BBMap_37.99.tar.gz -C Software
rm Software/BBMap_37.99.tar.gz