C++ htslib/bwa-mem/fermi interface for interrogating sequence data

BWA-MEME: Faster BWA-MEM2 using learned-index

Sentieon DNAseq

Mapping using PCAP

Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

A pipeline to investigate horizontal gene transfer from NGS data

The DKFZ alignment workflow plugin originally developed at the eilslabs

JNI code for bwa mem

PARMIK is a fast and memory-efficient tool for identifying the "Partial Match" region between two genomic sequences.

R wrapper for BWA-backtrack and BWA-MEM aligners

vSNP -- validate SNPs

The second part of https://github.com/npanuhin/BIOCAD

Small GATK alignment and variant calling pipeline using python

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

Multi-class classification of drug resistance in MTB clinical isolates

Fast bwa-mem dna matching algor implemented in system verilog, fully synthesizable.

Multi-class classification of drug resistance in MTB clinical isolates